Difference: EducationBioinformaticsIILab5 (1 vs. 5)

Revision 5
04 Apr 2011 - Main.PerryMoerland
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META TOPICPARENT name="EducationBioinformaticsII"
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Course material

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Data

  • Data for the exercises
Revision 4
25 Apr 2010 - Main.PerryMoerland
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META TOPICPARENT name="EducationBioinformaticsII"
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Line: 11 to 11
 

Course material

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  • Exercises & answers
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Data

  • Data for the exercises
Revision 3
20 Apr 2010 - Main.PerryMoerland
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META TOPICPARENT name="EducationBioinformaticsII"
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Course material

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Revision 2
19 Apr 2010 - Main.PerryMoerland
Line: 1 to 1
 
META TOPICPARENT name="EducationBioinformaticsII"
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Line: 10 to 10
 

Course material

  • Lecture
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  • Exercises
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  • Exercises & answers
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Data

  • Data for the exercises
 

Literature

  • Primer on clustering
  • Primer on principal component analysis
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  • The ctc package from Bioconductor provides functions for communication with these programs
  • The amap package from CRAN offers optimized functions for clustering large datasets
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  • Exercises that come with the microrarray lecture use the TIGR Multiexperiment Viewer (TMEV) for clustering. TMEV is also installed on the PCs in the exercise rooms
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