Difference: EducationBiomedicalSciences (1 vs. 12)

Revision 12
29 Sep 2014 - Main.PerryMoerland
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Medical Bioinformatics

 
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  • Periode(n) Semester 2 ( blok 4 1-2-2010 t/m 26-3-2010)
  • Onderwijsinstituut College of Science domein Levens- en Aardwetenschappen
  • Verzorgd door Swammerdam Instituut voor Levenswetenschappen (SILS)
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  • Inlichtingen dr. ir. H.C.J. Hoefsloot
  • Nieuwe Achtergracht 166 kamer C.707
  • +31 20 5255867
Revision 11
28 Apr 2011 - Main.AngelaLuijf
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Medical Bioinformatics

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Revision 10
18 Mar 2010 - Main.BarberaVanSchaik
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  Please, carefully read the instructions:
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Papers and links transcriptome maps:
 

Login to computer server of the Bioinformatics Laboratory

For some of the mini projects you need access to the computer server of the Bioinformatics Laboratory. To get access you need to install Putty and Xming. The instructions are given below.
Revision 9
10 Mar 2010 - Main.AntoineVanKampen
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  Please, carefully read the instructions:
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Login to computer server of the Bioinformatics Laboratory

For some of the mini projects you need access to the computer server of the Bioinformatics Laboratory. To get access you need to install Putty and Xming. The instructions are given below.

Configuration PuTTY

Session:
  • Host = www.bioinformaticslaboratory.nl
  • Port = 22
  • Protocol = SSH

Connection
  • Sending of null packets to keep session active: 3600

Connection → SSH → Tunnels:
  • Enable X11 forwarding = on
  • X display location = localhost:0

Session:
  • → Save

Start the connection

Just startup Xming and PuTTY. Xming is used as X-server. When PuTTY is started you'll get a terminal where you can enter your username and password.
 

Contact

Antoine van Kampen (a.h.vankampen@amc.uva.nl / 020-5667096 / 06-41768067) \ No newline at end of file
Revision 8
24 Feb 2010 - Main.AntoineVanKampen
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Rooster
Maandag 15 feb; 9.00-11.00 Geen practicum
Dinsdag 16-feb; 9.00-11.00 Practicum: 11.00-13.00
 

Bioinformatics

  • Vakcode BW02K
  • Admin. code FDBA
Revision 7
14 Feb 2010 - Main.AntoineVanKampen
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  Topics:
  • Chapter 5 (pptx). Are Neanderthals among us? Variation within and between species.
  • Chapter 6 (pptx). Fighting the Human Immunodeficiency Virus (HIV) Natural selection at the molecular level.
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Revision 6
14 Feb 2010 - Main.AntoineVanKampen
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Topics:
  • Chapter 5 (pptx). Are Neanderthals among us? Variation within and between species.
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  • Chapter 6 (pptx). Fighting the Human Immunodeficiency Virus (HIV) Natural selection at the molecular level. (to be added)
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  • Chapter 7 (pptx). Severe Acute Respiratory Syndrome (SARS). A post-genomic epidemic. Phylogenetic analysis. (to be added)
  • Scores (ppt). The basics of score matrices and their statistical evaluation.
Revision 5
11 Feb 2010 - Main.AntoineVanKampen
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Rooster
Maandag 15 feb; 9.00-11.00 Geen practicum
Dinsdag 16-feb; 9.00-11.00 Practicum: 11.00-13.00
 

Bioinformatics

  • Vakcode BW02K
  • Admin. code FDBA
Revision 4
11 Feb 2010 - Main.AntoineVanKampen
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META TOPICPARENT name="EducationBioLab"
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  • Chapter 6 (pptx). Fighting the Human Immunodeficiency Virus (HIV) Natural selection at the molecular level. (to be added)
  • Chapter 7 (pptx). Severe Acute Respiratory Syndrome (SARS). A post-genomic epidemic. Phylogenetic analysis. (to be added)
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  • Scores (ppt). The basics of score matrices and their statistical evaluation.
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  • Scores (ppt). The basics of score matrices and their statistical evaluation.
 
Revision 3
07 Feb 2010 - Main.AntoineVanKampen
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Introduction to Bioinformatics
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Bioinformatics

 
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Bachelor Biomedical Sciences and Bachelor Psychobiology
February 2010
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Teacher: prof. dr. A.H.C. van Kampen (Antoine)
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Book: Introduction to computational genomics, a case study approach, Nello Cristianini and Matthew W. Hahn, ISBN 0 521 67191-4 (Cambridge University Press).

Course material

Here you find all material related to the topics presented by prof. dr. A.H.C. van Kampen (Antoine)
 

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Mini project

In this part of the module you will learn to use bioinformatics methods and databases to address a biological problem. You will:
  • Perform a full literature research
  • Perform a simple programming exercise
  • Write a report

Please, carefully read the instructions:
 
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Examples of computational exercises
  • document
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Contact

Antoine van Kampen (a.h.vankampen@amc.uva.nl / 020-5667096 / 06-41768067)
Revision 2
07 Feb 2010 - Main.AntoineVanKampen
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META TOPICPARENT name="EducationBioLab"
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Under construction
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Introduction to Bioinformatics

Bachelor Biomedical Sciences and Bachelor Psychobiology
February 2010

Teacher: prof. dr. A.H.C. van Kampen (Antoine)

Topics:

Examples of computational exercises
  • document
 
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