Difference: EducationIntroductionToBioinformatics (1 vs. 64)

Revision 64
Changes from r61 to r64
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META TOPICPARENT name="EducationBioLab"
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Medical Bioinformatics

 
Back to menu

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  Teacher: Mark Santcroos

Presentation:
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Topics from previous editions

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Phylogenetics

Teacher: Prof Dr Antoine van Kampen
Revision 61
Changes from r58 to r61
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META TOPICPARENT name="EducationBioLab"
Medical Bioinformatics

Line: 117 to 117
 

Pathways

Teacher: Umesh Nandal and Perry Moerland
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  • Cytoscape: program for network data integration, analysis, and visualization
  • Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network, Ideker et al, Science (2001) html pdf
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  • Biological networks video link
 

Preprocessing of metabolomics data

Teacher: Prof Dr Antoine van Kampen
Revision 58
Changes from r55 to r58
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META TOPICPARENT name="EducationBioLab"
Medical Bioinformatics

Line: 101 to 101
 

DNA microarray analysis

Teacher: Dr ir Perry Moerland
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Human Genome Project

Line: 112 to 112
 

SNPs and genome-wide association

Teacher: Dr ir Perry Moerland
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Pathways

Teacher: Umesh Nandal and Perry Moerland
Revision 55
Changes from r52 to r55
Line: 1 to 1
 
META TOPICPARENT name="EducationBioLab"
Medical Bioinformatics

Line: 51 to 51
 

RNA sequencing

Teacher: Marcel Willemsen
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Gene detection and genome annotation

Teacher: Prof Dr Antoine van Kampen
Line: 60 to 60
 

  • Tutorial
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Deleted:
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Line: 93 to 92
 

Sequence alignment and Blast

Teacher: Dr Aldo Jongejan
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Revision 52
Changes from r49 to r52
Line: 1 to 1
 
META TOPICPARENT name="EducationBioLab"
Medical Bioinformatics

Line: 23 to 23
 

AMC Graduate School: Introduction to Bioinformatics

Schedule and registration

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Introduction to Bioinformatics

Teacher: Barbera van Schaik
Changed:
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Biological Databases

Teachers:
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  • Aldo Jongejan
  • Umesh Nandal
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Bioinformatics of sequencing

Line: 131 to 131
 

e-Science

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Teacher: Dr Silvia Delgado Olabarriaga
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Teacher: Mark Santcroos
 

Presentation:
Revision 49
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META TOPICPARENT name="EducationBioLab"
Medical Bioinformatics

Line: 89 to 89
 
Added:
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Sequence alignment and Blast

Teacher: Dr Aldo Jongejan
Line: 119 to 120
 

Changed:
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  • Answers to exercises
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  • Cytoscape: program for network data integration, analysis, and visualization
  • Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network, Ideker et al, Science (2001) html pdf
Line: 131 to 133
 

e-Science

Teacher: Dr Silvia Delgado Olabarriaga
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To be added
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Presentation:
 

Topics from previous editions

Revision 46
Changes from r43 to r46
Line: 1 to 1
 
META TOPICPARENT name="EducationBioLab"
Medical Bioinformatics

Line: 117 to 117
 

Pathways

Teacher: Umesh Nandal and Perry Moerland
Changed:
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<
>
>
 
  • Cytoscape: program for network data integration, analysis, and visualization
  • Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network, Ideker et al, Science (2001) html pdf

Preprocessing of metabolomics data

Teacher: Prof Dr Antoine van Kampen
Changed:
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<

To be added
>
>
Presentation:
 

e-Science

Teacher: Dr Silvia Delgado Olabarriaga
Revision 43
Changes from r40 to r43
Line: 1 to 1
 
META TOPICPARENT name="EducationBioLab"
Medical Bioinformatics

Line: 101 to 101
 

DNA microarray analysis

Teacher: Dr ir Perry Moerland
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Human Genome Project

Line: 112 to 112
 

SNPs and genome-wide association

Teacher: Dr ir Perry Moerland
Changed:
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Pathways

Teacher: Umesh Nandal and Perry Moerland

Added:
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  • Exercises
  • Cytoscape: program for network data integration, analysis, and visualization
  • Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network, Ideker et al, Science (2001) html pdf
 

Preprocessing of metabolomics data

Teacher: Prof Dr Antoine van Kampen
Revision 40
Changes from r37 to r40
Line: 1 to 1
 
META TOPICPARENT name="EducationBioLab"
Medical Bioinformatics

Line: 51 to 51
 

RNA sequencing

Teacher: Marcel Willemsen
Changed:
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To be added
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Gene detection and genome annotation

Teacher: Prof Dr Antoine van Kampen
Line: 86 to 86
 

Statistical analysis of transcript counts

Teacher: Dr Jan Ruijter
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Sequence alignment and Blast

Teacher: Dr Aldo Jongejan
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Revision 37
Changes from r34 to r37
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META TOPICPARENT name="EducationBioLab"
Medical Bioinformatics

Line: 13 to 13
 

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Line: 27 to 30
 

Introduction to Bioinformatics

Teacher: Barbera van Schaik
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Biological Databases

Teachers:
  • Barbera van Schaik
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  • Dr Aldo Jongejan
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  • Aldo Jongejan
 
  • Umesh Nandal
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Bioinformatics of sequencing

Teacher: Prof Dr Frank Baas
Revision 34
Changes from r31 to r34
Line: 1 to 1
 
META TOPICPARENT name="EducationBioLab"
Medical Bioinformatics

Back to menu
Deleted:
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Added:
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AMC Graduate School: Introduction to Bioinformatics

Schedule and registration

Changed:
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<
>
>
 

Introduction to Bioinformatics

Changed:
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<
Teacher: prof. dr. Antoine van Kampen
>
>
Teacher: Barbera van Schaik
 

Biological Databases

Changed:
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<
Teacher: prof. dr. Antoine van Kampen
>
>
Teachers:
  • Barbera van Schaik
  • Dr Aldo Jongejan
  • Umesh Nandal
 

Bioinformatics of sequencing

Changed:
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<
Teacher: Fred van Ruissen
>
>
Teacher: Prof Dr Frank Baas
 

Added:
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>

RNA sequencing

Teacher: Marcel Willemsen
 
Changed:
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<

Statistical analysis of transcript counts

Teacher: Dr. Jan Ruijter

DNA microarray analysis

Teacher: Dr. ir. Perry Moerland

>
>
To be added
 

Gene detection and genome annotation

Changed:
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<
Teacher: prof. dr. Antoine van Kampen
>
>
Teacher: Prof Dr Antoine van Kampen

 
Changed:
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<
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>
 
Changed:
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  • Sequence analysis
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  • Sequence analysis programs
 
Line: 59 to 66
 
Added:
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    • GLIMMER (not used in the exercises)
 
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  • Other programs
 
Added:
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  • Background information
 
Added:
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Statistical analysis of transcript counts

Teacher: Dr Jan Ruijter

 

Sequence alignment and Blast

Changed:
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<
Teacher: Aldo Jongejan
>
>
Teacher: Dr Aldo Jongejan
 
Changed:
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<

Phylogenetics

Teacher: prof. dr. Antoine van Kampen
>
>

DNA microarray analysis

Teacher: Dr ir Perry Moerland
 
Changed:
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<
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>

Human Genome Project

Teacher: Prof Dr Rogier Versteeg and Dr Jan Koster

To be added
 

SNPs and genome-wide association

Changed:
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Teacher: Dr. ir. Perry Moerland
>
>
Teacher: Dr ir Perry Moerland
 

Pathways

Changed:
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Teacher: Miranda Stobbe
>
>
Teacher: Umesh Nandal and Perry Moerland
 

Added:
>
>

Preprocessing of metabolomics data

Teacher: Prof Dr Antoine van Kampen

To be added

e-Science

Teacher: Dr Silvia Delgado Olabarriaga

To be added
 

Topics from previous editions

Score matrices

Changed:
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Teacher: prof. dr. Antoine van Kampen
>
>
Teacher: Prof Dr Antoine van Kampen
 

Line: 104 to 138
  \ No newline at end of file
Added:
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Phylogenetics

Teacher: Prof Dr Antoine van Kampen

  \ No newline at end of file
Revision 31
Changes from r28 to r31
Line: 1 to 1
 
META TOPICPARENT name="EducationBioLab"
Changed:
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Back to menu

>
>
Medical Bioinformatics

Back to menu
 

AMC Graduate School: Introduction to Bioinformatics

Changed:
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<

Schedule

>
>

Schedule and registration

 
Added:
>
>
 

Introduction to Bioinformatics

Teacher: prof. dr. Antoine van Kampen
Line: 46 to 47
  Teacher: Dr. Jan Ruijter

Changed:
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<
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>
 

DNA microarray analysis

Line: 85 to 86
 

Phylogenetics

Teacher: prof. dr. Antoine van Kampen
Changed:
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>
 

SNPs and genome-wide association

Teacher: Dr. ir. Perry Moerland
Revision 22
Changes from r19 to r22
Line: 1 to 1
 
META TOPICPARENT name="EducationBioLab"
Back to menu
Line: 10 to 10
 

AMC Graduate School: Introduction to Bioinformatics

Schedule

Changed:
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<
>
>
 

Introduction to Bioinformatics

Teacher: prof. dr. Antoine van Kampen
Line: 23 to 23
 
Added:
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>

Bioinformatics of sequencing

Teacher: Fred van Ruissen

 

Score matrices

Teacher: prof. dr. Antoine van Kampen
Line: 46 to 52
 

DNA microarray analysis

Teacher: Dr. ir. Perry Moerland
Changed:
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>
 

Gene finding

Line: 69 to 75
 

Sequence alignment and Blast

Changed:
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Teacher: Barbera van Schaik
>
>
Teacher: Aldo Jongejan
 
Changed:
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Line: 84 to 90
 

SNPs and genome-wide association

Teacher: Dr. ir. Perry Moerland
Changed:
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Pathways

Teacher: Miranda Stobbe
Revision 19
Changes from r16 to r19
Line: 1 to 1
 
META TOPICPARENT name="EducationBioLab"
Back to menu
Line: 68 to 68
 
Added:
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Sequence alignment and Blast

Teacher: Barbera van Schaik
 

Phylogenetics

Teacher: prof. dr. Antoine van Kampen

Changed:
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<

SNPs and genetical genomics

>
>

SNPs and genome-wide association

  Teacher: Dr. ir. Perry Moerland
Added:
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Pathways

Teacher: Miranda Stobbe \ No newline at end of file
Added:
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  \ No newline at end of file
Revision 16
Changes from r13 to r16
Line: 1 to 1
 
META TOPICPARENT name="EducationBioLab"
Back to menu
Line: 53 to 53
  Teacher: prof. dr. Antoine van Kampen

Added:
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>

 

Phylogenetics

Teacher: prof. dr. Antoine van Kampen
Added:
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SNPs and genetical genomics

Teacher: Dr. ir. Perry Moerland \ No newline at end of file
Added:
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Pathways

Teacher: Miranda Stobbe
  \ No newline at end of file
Revision 13
Changes from r10 to r13
Line: 1 to 1
 
META TOPICPARENT name="EducationBioLab"
Back to menu
Line: 39 to 39
 

Statistical analysis of transcript counts

Teacher: Dr. Jan Ruijter
Added:
>
>
 

DNA microarray analysis

Teacher: Dr. ir. Perry Moerland
Changed:
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<
>
>
 

Gene finding

Teacher: prof. dr. Antoine van Kampen
Deleted:
<
<

 
Added:
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>
 

Phylogenetics

Teacher: prof. dr. Antoine van Kampen
Revision 10
Changes from r7 to r10
Line: 1 to 1
 
META TOPICPARENT name="EducationBioLab"
Back to menu
Line: 24 to 24
 
Changed:
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Scoring matrices

>
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Score matrices

  Teacher: prof. dr. Antoine van Kampen

  • Scores (ppt). The basics of score matrices and their statistical evaluation.
Line: 36 to 36
 
Added:
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Statistical analysis of transcript counts

Teacher: Dr. Jan Ruijter

 

DNA microarray analysis

Teacher: Dr. ir. Perry Moerland
Line: 47 to 51
  Teacher: prof. dr. Antoine van Kampen
Deleted:
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Note: the computer practicum 'gene finding' will probably not take place.
 

Phylogenetics

Teacher: prof. dr. Antoine van Kampen
Revision 7
Changes from r4 to r7
Line: 1 to 1
 
META TOPICPARENT name="EducationBioLab"
Back to menu
Line: 12 to 12
 

Schedule

Added:
>
>

Introduction to Bioinformatics

Teacher: prof. dr. Antoine van Kampen

 

Biological Databases

Teacher: prof. dr. Antoine van Kampen
Changed:
<
<
>
>
 
Changed:
<
<

Score matrices

>
>

Scoring matrices

  Teacher: prof. dr. Antoine van Kampen

  • Scores (ppt). The basics of score matrices and their statistical evaluation.
Line: 30 to 36
 
Added:
>
>

DNA microarray analysis

Teacher: Dr. ir. Perry Moerland

 

Gene finding

Teacher: prof. dr. Antoine van Kampen
Line: 36 to 49
 

Note: the computer practicum 'gene finding' will probably not take place.
Deleted:
<
<
 

Phylogenetics

Teacher: prof. dr. Antoine van Kampen \ No newline at end of file
Added:
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SNPs and genetical genomics

Teacher: Dr. ir. Perry Moerland
Revision 4
Changes from r1 to r4
Line: 1 to 1
 
META TOPICPARENT name="EducationBioLab"
Back to menu

Changed:
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Under construction
>
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<--  
-->

AMC Graduate School: Introduction to Bioinformatics

Schedule

Biological Databases

Teacher: prof. dr. Antoine van Kampen

Score matrices

Teacher: prof. dr. Antoine van Kampen

Gene finding

Teacher: prof. dr. Antoine van Kampen

Note: the computer practicum 'gene finding' will probably not take place.

Phylogenetics

Teacher: prof. dr. Antoine van Kampen
  \ No newline at end of file
 
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