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Prof. dr. A.H.C. van Kampen (Antoine) QR (click) In the picture
Bioinformatics Laboratory
Department of Clinical Epidemiology, Biostatistics and Bioinformatics (KEBB)
Academic Medical Center (AMC)
Who is Who page AMC

  • Visiting address:
    • Meibergdreef 9
    • J1B-208 (J-building, floor 1B)
  • Postal address:
    • PO Box 22700
    • 1100 DE Amsterdam
    • The Netherlands

  • Phone: ++31-20-5667096
  • Mobile: 06-41768067 (not switched on in the AMC)
  • Email: a.h.vankampen@amc.uva.nl
  • web: www.bioinformaticslaboratory.nl


Background
Antoine van Kampen heads the Bioinformatics Laboratory at the AMC and holds the chair Biological and Biomedical Information Science with a special focus on Medical Bioinformatics. This chair is established by the Genootschap ter bevordering van natuur-, genees- en heelkunde together with the Faculty of Science. Van Kampen has a parttime position in the Biosystems Data Analysis group of the Swammerdam Institute for Life Sciences (SILS) of the University of Amsterdam to facilitate collaborations between the AMC and the Science Faculty.


Short resume
Master of science University of Nijmegen (Radboud University), August 31, 1992
Main subject Solid state chemistry, Informatics, Chemometrics
Doctorate University of Nijmegen, Department of Chemometrics, October 8, 1997
Supervisor Prof. dr. L.M.C. Buydens
Title of thesis The applicability of genetic algorithms to complex optimization problems in chemistry
March - Sept 1997 Post doc
University of Nijmegen, sub-faculty of Chemistry
Project: information technology in chemistry education
September 1997 - Head of Bioinformatics Laboratory AMC
March 1, 2006 - March 1, 2010 Scientific Director Netherlands Bioinformatics Centre (NBIC; www.nbic.nl)
June 1, 2006 - Associate professor (UHD), AMC
February 2007 - Principal Investigator, AMC
February 22, 2007 - Professor Medical Bioinformatics.
Swammerdam Institute for Life Sciences (SILS), Faculty of Science, University of Amsterdam
May 20, 2011 Inaugural lecture (oratie)

Key publications
  • van Houdt JKJ, Nowakowska BA, Sousa SB, van Schaik BDC, Seuntjens E, Avonce N, Sifrim A, Abdul-Rahman OA, van den Boogaard MJH, Bottani A, Castori M, Cormier-Daire V, Deardorff MA, Filges I, Fryer A, Fryns JP, Gana S, Garavelli L, Gillessen-Kaesbach G, Hall BD, Horn D, Huylebroeck D, Klapecki J, Krajewska-Walasek M, Kuechler A, Lines MA, Maas S, Macdermot KD, McKee S, Magee A, de Man SA, Moreau Y, Morice-Picard F, Obersztyn E, Pilch J, Rosser E, Shannon N, Stolte-Dijkstra I, van Dijck P, Vilain C, Vogels A, Wakeling E, Wieczorek D, Wilson L, Zuffardi O, van Kampen AHC, Devriendt K, Hennekam R, Vermeesch JR, Heterozygous missense mutations in SMARCA2 cause Nicolaides-Baraitser syndrome. NAT GENET 2012;44 (4):445-U261 [PubMed]
  • Klarenbeek PL, Remmerswaal EBM, ten Berge IJM, Doorenspleet ME , van Schaik BDC, Esveldt REE, Koch SD, ten Brinke A, van Kampen AHC, Bemelman FJ, Tak PP, Baas F, de Vries N, van Lier RAW, Deep sequencing of antiviral T-cell responses to HCMV and EBV in humans reveals a stable repertoire that is maintained for many years. PLOS PATHOG 2012;8 (9):e1002889 [PubMed]
  • Klarenbeek PL, de Hair MJH, Doorenspleet ME , van Schaik BDC, Esveldt REE, van de Sande MGH, Cantaert T, Gerlag DM, Baeten D, van Kampen AHC, Baas F, Tak PP, de Vries N, Inflamed target tissue provides a specific niche for highly expanded T-cell clones in early human autoimmune disease. ANN RHEUM DIS 2012;71 (6):1088-1093 [PubMed]
  • Doorenspleet ME , Klarenbeek PL, de Hair MJH, van Schaik BDC, Esveldt REE, van Kampen AHC, Gerlag DM, Musters A, Baas F, Tak PP, de Vries N, Rheumatoid arthritis synovial tissue harbours dominant B-cell and plasma-cell clones associated with autoreactivity. ANN RHEUM DIS 2014;73 (4):756-762 [PubMed]
  • Schopman NCT, Willemsen M, Liu YP, Bradley T, van Kampen A, Baas F, Berkhout B, Haasnoot J, Deep sequencing of virus-infected cells reveals HIV-encoded small RNAs. NUCLEIC ACIDS RES 2012;40 (1):414-427 [PubMed]

Publications from my PhD period
  • van Kampen, A. H. C., Buydens, L. M. C., Lucasius, C. B., and Blommers, M. J. J. (1996) Optimisation of Metric Matrix Embedding by Genetic Algorithms. Journal of Biomolecular NMR. 7(3), 214-24
  • van Kampen, A. H. C., Strom, C. S., and Buydens, L. M. C. (1996) Lethalization, Penalty and Repair Functions for Constraint Handling in the Genetic Algorithm Methodology. Chemometrics and Intelligent Laboratory Systems, 34(1), 55-68
  • van Kampen, A. H. C., and Buydens, L. M. C. (1996) The Effectiveness of Recombination in the Genetic Algorithm Methodology. A Comparison to Simulated Annealing in Proceedings of the Second Nordic Workshop on Genetic Algorithms and Their Applications, pp. 115-30, University of Vaasa, Finland.
  • van Kampen, A. H. C., Beckers, M. L. M., and Buydens, L. M. C. (1997) A Comparative Study of the Dg-Omega (DGW), DGII, and Gat Method for the Structure Elucidation of a Methylene-Acetal Linked Thymine Dinucleotide. Computers & Chemistry, 21(5), 281-97
  • van Kampen, A. H. C., and Buydens, L. M. C. (1997) The Ineffectiveness of Recombination in a Genetic Algorithm for the Structure Elucidation of a Heptapeptide in Torsion Angle Space. A Comparison to Simulated Annealing. Chemometrics and Intelligent Laboratory Systems, 36, 141-52
  • van Kampen, A. H. C., and Buydens, L. M. C. (1997) Reinvestigation of a Genetic Based Classifier System. The Effectiveness of Recombination. Computers & Chemistry, 21(3), 153-60
  • van Kampen, A. H. C., Ramadan, Z., Mulholland, M., Hibbert, D. B., and Buydens, L. M. C. (1997) Learning Classification Rules from an Ion Chromatography Database Using a Genetic Algorithm Based Classifier System. Analytica Chimica Acta, 344, 1-15


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Topic revision: r11 - 01 Feb 2016, AngelaLuijf
 

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