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- Location: Academic Medical Center, Amsterdam.
- Course material:
*All course material is provided during the course, no need to print anything yourself* - ECTS: 0.4
- Teachers: Perry Moerland (coordinator), Aldo Jongejan and Michel Hof

Location | Day | Time | Topic | Lectures | Exercises | Answers |
---|---|---|---|---|---|---|

L0-227 | October 1, 2018 | 09.30-12.30 | Handout Slides, Example code (R), Example code (Rmd), Example code (html) | pdf, R code | ||

October 1, 2018 | 12.30-13.30 | Lunch break | ||||

L0-227 | October 1, 2018 | 13.30-16.30 | ||||

L0-227 | October 4, 2018 | 9.30-12.30 | ||||

October 4, 2018 | 12.30-13.30 | Lunch break | ||||

L0-227 | October 4, 2018 | 13.30-16.30 |

- R homepage
- R and its packages can be downloaded from CRAN
- Introductory material
- Learn R interactively using swirl. Use their 'R Programming' course to refresh what you learnt in our course. There is also a web-based interface to swirl.
- A basic introduction to R, somewhat in line with this course
- Another short introduction to R with a nice list of common error messages (and how to maybe solve them) on the last page
- This page shows the commands to be used for many aspects of a statistical analysis, and has been created especially for experienced users of some other statistical packages
- Cookbook for R offers many great examples
- Several on-line courses at the beginner and intermediate level with lots of exercises
- Documentation for R packages organized by topical domains
- Other sites to get you started are Impatient R and Statistics with R.
- There is a book called "R for SAS and SPSS users''. The corresponding web site also has a freely downloadable early version of the book. It also has a comparison table that lists the corresponding R packages for many SAS and SPSS procedures.

- Manuals (basic)
- An introduction to R (pdf,html): R in 100 pages
- R reference card: R in 6 pages
- Other useful cheat sheets (for example, for ggplot2 and importing and transforming data via tidyr and dplyr) provided by the people at RStudio

- Manuals (advanced)
- Manuals (graphics)
- A preprint of the book ggplot2: elegant graphics for data analysis

- Editors
- GUIs
- Many books have been written that explain how to use R for statistical analysis. See
- Miscellaneous
- A web site with many beautiful graphs and the corresponding R code
- There are programs that allow running R from Excel and from SPSS (or search on 'R plug-in' at https://www.ibm.com/developerworks/)

- Bioconductor support site
- Recommended literature
- Bioconductor-related publications
- Bioconductor Case Studies, Hahne, F.; Huber, W.; Gentleman, R.; Falcon, S., Spinger, 2008.
- Bioinformatics and Computational Biology Solutions Using R and Bioconductor, Gentleman, R.; Carey, V.; Huber, W.; Irizarry, R.; Dudoit, S. (Eds.), Springer, 2005.

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Topic revision: r47 - 28 Sep 2018, PerryMoerland

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