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Course material

Data

  • Data for the exercises

Literature

  • Primer on clustering
  • Primer on principal component analysis
  • Primer on motifs
  • Primer on motif discovery
  • Evening element paper on the circadian clock in Arabidopsis

Packages and related R documents

  • The package ClassDiscovery used in the exercises is not part of Bioconductor and can be downloaded here
  • Open source cluster programs
  • The ctc package from Bioconductor provides functions for communication with these programs
  • The amap package from CRAN offers optimized functions for clustering large datasets

Topic revision: r5 - 04 Apr 2011, PerryMoerland
 

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